Neural Network Accuracy Optimization
Solution 1:
You could try the following things. I have written this roughly in the order of importance - i.e. the order I would try things to fix the accuracy problem you are seeing:
Normalise your input data. Usually you would take mean and standard deviation of training data, and use them to offset+scale all further inputs. There is a standard normalising function in sklearn for this. Remember to treat your test data in the same way (using the mean and std from the training data, not recalculating it)
Train for more epochs. For problems with small numbers of features and limited training set sizes, you often have to run for thousands of epochs before the network will converge. You should plot the training and validation loss values to see whether the network is still learning, or has converged as best as it can.
For your simple data, I would avoid relu activations. You may have heard they are somehow "best", but like most NN options, they have types of problems where they work well, and others where they are not best choice. I think you would be better off with tanh or sigmoid activations in hidden layers for your problem. Save relu for very deep networks and/or convolutional problems on images/audio.
Use more training data. Not clear how much you are feeding it, but NNs work best with large amounts of training data.
Provided you already have lots of training data - increase size of hidden layers. More complex relationships require more hidden neurons (and sometimes more layers) for the NN to be able to express the "shape" of the decision surface. Here is a handy browser-based network allowing you to play with that idea and get a feel for it.
Add one or more dropout layers after the hidden layers or add some other regularisation. The network could be over-fitting (although with a training accuracy of 0.5 I suspect it isn't). Unlike relu, using dropout is pretty close to a panacea for tougher NN problems - it improves generalisation in many cases. A small amount of dropout (~0.2) might help with your problem, but like most hyper-parameters, you will need to search for the best values.
Finally, it is always possible that the relationship you want to find that allows you to predict Y from X is not really there. In which case it would be a correct result from the NN to be no better than guessing at Y.
Solution 2:
Neil Slater already provided a long list of helpful general advices.
In your specific examaple, normalization is the important thing. If you add the following lines to your code
...
X = dataset[:,0:3]
from sklearn.preprocessing import StandardScaler
scaler = StandardScaler()
X = scaler.fit_transform(X)
you will get 100% accuracy on your toy data, even with much simpler network structures. Without normalization, the optimizer won't work.
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